Our Publications
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KG. Liakos, P. Busato, D. Moshou, S. Pearson, D. Bochtis, "Machine learning in agriculture: A review", Sensors, 2018
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KG. Liakos, S. Moustakidis, G. Tsiotra, T. Bartzanas, D. Bochtis, C. Parisses, "Machine Learning Based Computational Analysis Method for Cattle Lameness Prediction", HAICTA, 2017
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D. Katikaridis, D. Bechtsis, I. Menexes, KG. Liakos, D. Vlachos, D. Bochtis, "A Software Tool for Efficient Agricultural Logistics", HAICTA, 2017
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KG. Liakos, GK. Georgakilas, S. Moustakidis, P. Karlsson, FC. Plessas, "Machine Learning for Hardware Trojan Detection: A Review", PACET, 2019
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IS. Vlachos, K. Zagganas, MD. Paraskevopoulou, G. Georgakilas, D. Karagkouni, T. Vergoulis, T. Dalamagas, AG. Hatzigeorgiou, "DIANA-miRPath v3.0: deciphering microRNA function with experimental support", Nucleic Acids Research, 2015
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MD. Paraskevopoulou, G. Georgakilas, N. Kostoulas, IS. Vlachos, T. Vergoulis, M. Reczko, C. Filippidis, T. Dalamagas, AG. Hatzigeorgiou, "DIANA-microT web server v5. 0: service integration into miRNA functional analysis workflows", Nucleic Acids Research, 2013
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T. Vergoulis, IS. Vlachos, P. Alexiou, G. Georgakilas, M. Maragkakis, M. Reczko, S. Gerangelos, N. Koziris, T. Dalamagas, AG. Hatzigeorgiou, "TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support", Nucleic Acids Research, 2012
Peer-Reviewed Articles
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Georgakilas GK et al. ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data. Scientific Reports, 2019.
Peer-Reviewed Articles
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Liakos KG et al. Machine learning in agriculture: A review. Sensors, 2018.
Peer-Reviewed Articles
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Georgakilas GK ... Liakos KG et al. MuStARD: a Deep Learning method for intra-and inter-species scanning identification of small RNA molecules. (accepted for publication in Scientific Reports)
Peer-Reviewed Articles
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Johnson JL*, Georgakilas GK*, Petrovic J* et al. Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells. Cell Immunity, 2018.
Peer-Reviewed Articles
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Cai S, Georgakilas GK et al. A cosine similarity-based method to infer variability of chromatin accessibility at the single-cell level. Frontiers in Genetics, 2018.
Peer-Reviewed Articles
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Johnson B … Georgakilas GK et al. Biotin tagging of MeCP2 reveals contextual insights into the Rett syndrome transcriptome. Nature Medicine, 2017.
Peer-Reviewed Articles
Peer-Reviewed Articles
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Vlachos IS … Georgakilas GK et al. DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Research, 2016.
Peer-Reviewed Articles
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Georgakilas GK et al. DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Research, 2015.
Peer-Reviewed Articles
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Paraskevopoulou MD … Georgakilas GK et al. DIANA-LncBase v2: Indexing microRNA targets on non-coding transcripts. Nucleic Acids Research, 2015.
Peer-Reviewed Articles
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Vlachos IS … Georgakilas GK et al. DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Research, 2015.
Peer-Reviewed Articles
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Georgakilas GK et al. microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs. Nature Communications, 2014.
Peer-Reviewed Articles
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Vlachos IS … Georgakilas GK et al. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucleic Acids Research, 2014.
Peer-Reviewed Articles
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Vergoulis T … Georgakilas GK et al. mirPub: a database for searching microRNA publications. Bioinformatics, 2014.
Peer-Reviewed Articles
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Paraskevopoulou MD*, Georgakilas GK* et al. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Research, 2013.
Peer-Reviewed Articles
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Paraskevopoulou MD*, Georgakilas GK* et al. DIANA-LncBase: Experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Research, 2013.
Peer-Reviewed Articles
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Vlachos IS … Georgakilas GK et al. DIANA miRPath v.2.0: Investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Research, 2012.
Peer-Reviewed Articles
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Vergoulis T … Georgakilas GK et al. TarBase 6.0: Capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Research, 2012.
Conference Proceedings
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Liakos KG, Georgakilas GK et al. Machine Learning for Hardware Trojan Detection: A Review. PACET, 2019.
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Liakos KG et al. Machine Learning Based Computational Analysis Method for Cattle Lameness Prediction. HAICTA, 2017.
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Katikaridis D ... Liakos KG et al. Agent Based Software Tool for Efficient Agricultural Logistics. HAICTA, 2017.
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Katikaridis D ... Liakos KG et al. A Software Tool for Efficient Agricultural Logistics. HAICTA, 2017.
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Kanellos I ... Georgakilas GK et al. MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. International Conference on Theory and Practice of Digital Libraries, 2015.
Conference Oral/Poster Presentations
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Georgakilas GK. Deep Learning for intra- and inter-species mining for small RNAs. 3rd International Conference on the Long and the Short of Non-Coding RNAs, 2019. Oral presentation.
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Georgakilas GK. Accurate identification of microRNA transcription start sites with Next Generation Sequencing and Machine Learning. 10th Conference of the Hellenic Society for Computational Biology and Bioinformatics in Athens, 2015. Oral presentation.
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Georgakilas GK. Identification of microRNA transcription start sites by combining high-throughput experimental techniques and Machine Learning. The Long and Short of Non-Coding RNAs, 2015. Poster presentation.
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Georgakilas GK. microTSS: Accurate identification of miRNA transcription start sites using Machine Learning on Next Generation Sequencing data. Seminar in University of Thessaly, Department of Electrical and Computer Engineering, 2014. Oral presentation.
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Georgakilas GK. MicroRNA promoter analysis with Next Generation Sequencing data. Intelligent Systems for Molecular Biology, 2014. Poster presentation.
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Georgakilas GK. DIANA-LncBase: A novel database of microRNA-lncRNA putative interactions. Genomic Medicine in the Mediterranean, 2013. Oral presentation.
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Georgakilas GK. DIANA-miRPath v2.0: The Next Generation of Tools for miRNA Pathway Analysis. 8th conference of the Hellenic Society for Computational Biology and Bioinformatics, 2013. Poster presentation.
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Georgakilas GK. TarBase 6.0: a database of more than 60,000 experimentally verified miRNA targets. Noncoding RNAs in Development and Cancer, 2013. Poster presentation.
Book Chapters
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Georgakilas GK et al. Identifying Pri-miRNA Transcription Start Sites. miRNA Biogenesis, 2018.
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Vlachos IS, Georgakilas GK et al. Computational Challenges and-omics Approaches for the Identification of microRNAs and Targets. Essentials of Noncoding RNA in Neuroscience, 2017.